miRBase entry: mze-mir-16b

Stem-loop mze-mir-16b


Accession
MI0034116
Description
Metriaclima zebra mze-mir-16b precursor miRNA


Sequence

UAGCAGCACGUAAAUAUUGGAGuuaacacucuagcugaagucuccaguauugaucguacugcugaa
((((((.(((..((((((((((.....((((.....).)))))))))))))...))).))))))..

Structure
--      C   -UA          uuaac   - u 
  UAGCAG ACG   AAUAUUGGAG     acu c a
  |||||| |||   ||||||||||     ||| | g
  gucguc ugc   uuaugaccuc     uga g c
aa      a   uag          -----   a u 


Annotation confidence Not enough data
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Genome context
AGTA03000193.1: 2298542-2298607 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mze-mir-16b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mze-miR-16b

Accession MIMAT0042344
Description Metriaclima zebra mze-miR-16b mature miRNA
Sequence 1 - UAGCAGCACGUAAAUAUUGGAG - 22
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381