miRBase entry: mze-mir-200a

Stem-loop mze-mir-200a


Accession
MI0034115
Description
Metriaclima zebra mze-mir-200a precursor miRNA


Sequence

caucuuaccugacagugcuggacuguacuacuguuguucUAACACUGUCUGGUAACGAUGUU
(((((((((.(((((((.((((....((....))...)))).))))))).))))).))))..

Structure
--    -     u       c    cugu  u 
  cauc uuacc gacagug ugga    ac a
  |||| ||||| ||||||| ||||    ||  
  GUAG AAUGG CUGUCAC AUcu    ug c
UU    C     U       A    -ugu  u 


Annotation confidence Not enough data
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Genome context
AGTA03000309.1: 1060065-1060126 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from mze-mir-200a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mze-miR-200a

Accession MIMAT0042343
Description Metriaclima zebra mze-miR-200a mature miRNA
Sequence 40 - UAACACUGUCUGGUAACGAUGUU - 62
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381