miRBase entry: mze-mir-17

Stem-loop mze-mir-17


Accession
MI0034112
Description
Metriaclima zebra mze-mir-17 precursor miRNA


Sequence

CAAAGUGCUUACAGUGCAGGUAguuuuguucaauucuacugcagugaaggcacuuucagc
.(((((((((.((.(((((.(((..((....))..)))))))).)).)))))))))....

Structure
---C         A  G     G   uu  g 
    AAAGUGCUU CA UGCAG UAg  uu u
    ||||||||| || ||||| |||  ||  
    uuucacgga gu acguc auc  aa u
cgac         a  g     -   uu  c 


Annotation confidence Not enough data
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Genome context
AGTA03000134.1: 1275021-1275080 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from mze-mir-17
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mze-miR-17

Accession MIMAT0042340
Description Metriaclima zebra mze-miR-17 mature miRNA
Sequence 1 - CAAAGUGCUUACAGUGCAGGUA - 22
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381