Stem-loop mze-mir-27a

Accession

MI0034108

Description

Metriaclima zebra mze-mir-27a precursor miRNA

Sequence

39095 reads, 1733.0 reads per million, 7 experiments

AGGACUUAGCUCGCUCCGUGAACAguucagugaaguccugugUUCACAGUGGCUAAGUUCCGC
.(((((((((.((((..(((((((...(((.(....))))))))))))))))))))))))...

Structure

--A         U    CC       guu   u a 
   GGACUUAGC CGCU  GUGAACA   cag g a
   ||||||||| ||||  |||||||   ||| |  
   CUUGAAUCG GUGA  CACUUgu   guc c g
CGC         -    --       ---   - u 

Annotation confidence High

Genome context

AGTA03000035.1: 9110644-9110706 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from mze-mir-27a

Mature mze-miR-27a-5p

• Accession: MIMAT0059974
• Description: Metriaclima zebra mze-miR-27a-5p mature miRNA
• Sequence: 1 - AGGACUUAGCUCGCUCCGUGAACA - 24
• Evidence: experimental ; Illumina [1]

Mature mze-miR-27a-3p

• Accession: MIMAT0042337
• Description: Metriaclima zebra mze-miR-27a-3p mature miRNA
• Sequence: 43 - UUCACAGUGGCUAAGUUCCGC - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381