miRBase entry: mze-mir-200b

Stem-loop mze-mir-200b


Accession
MI0034106
Description
Metriaclima zebra mze-mir-200b precursor miRNA


Sequence

caucuuacgaggcagcauuggauaucaucacuuucucUAAUACUGCCUGGUAAUGAUGAU
((((((((.((((((.((((((.............)))))).)))))).)))).))))..

Structure
--    -    g      c      uauca 
  cauc uuac aggcag auugga     u
  |||| |||| |||||| ||||||     c
  GUAG AAUG UCCGUC UAAUcu     a
UA    U    G      A      cuuuc 


Annotation confidence Not enough data
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Genome context
AGTA03000309.1: 1060253-1060312 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from mze-mir-200b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mze-miR-200b

Accession MIMAT0042335
Description Metriaclima zebra mze-miR-200b mature miRNA
Sequence 38 - UAAUACUGCCUGGUAAUGAUGAU - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381