miRBase entry: mze-mir-194a

Stem-loop mze-mir-194a


Accession
MI0034104
Description
Metriaclima zebra mze-mir-194a precursor miRNA


Sequence

UGUAACAGCAACUCCAUGUGGAagcugugucaguuccaguggaggugcuguuacuug
.(((((((((.((((((.(((((.(((...)))))))))))))).)))))))))...

Structure
--U         A      G     g   u 
   GUAACAGCA CUCCAU UGGAa cug  
   ||||||||| |||||| ||||| ||| g
   cauugucgu gaggug accuu gac  
guu         g      -     -   u 


Annotation confidence Not enough data
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Genome context
AGTA03000099.1: 706637-706693 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mze-mir-194a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mze-miR-194a

Accession MIMAT0042334
Description Metriaclima zebra mze-miR-194a mature miRNA
Sequence 1 - UGUAACAGCAACUCCAUGUGGA - 22
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381