miRBase entry: mze-mir-133b

Stem-loop mze-mir-133b


Accession
MI0034097
Description
Metriaclima zebra mze-mir-133b precursor miRNA


Sequence

gcuggucaaacggaaccaagucagguguuucugugaggUUUGGUCCCCUUCAACCAGCU
((((((..((.((.(((((((((.(......).)))..)))))).)).))..)))))).

Structure
-      ca  c  a      --   g ug 
 gcuggu  aa gg accaag  uca g  u
 ||||||  || || ||||||  ||| |   
 CGACCA  UU CC UGGUUU  agu u  u
U      AC  C  C      gg   g cu 


Annotation confidence Not enough data
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Genome context
AGTA03000110.1: 2480104-2480162 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mze-mir-133b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mze-miR-133b

Accession MIMAT0042329
Description Metriaclima zebra mze-miR-133b mature miRNA
Sequence 39 - UUUGGUCCCCUUCAACCAGCU - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381