miRBase entry: mze-mir-27d

Stem-loop mze-mir-27d

Accession

MI0034095

Description

Metriaclima zebra mze-mir-27d precursor miRNA

Sequence

CAGAACUUAGUUGACUGCUGACCagggagucuugaauauuugUUCACAGUGGCUAAGUUCGUCA
..((((((((((.((((.(((.((((............)))).)))))))))))))))))....

Structure

--CA          G    C   C    gaguc 
    GAACUUAGUU ACUG UGA Cagg     u
    |||||||||| |||| ||| ||||      
    CUUGAAUCGG UGAC ACU guuu     u
ACUG          -    -   U    auaag

Annotation confidence Not enough data

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Genome context

AGTA03000062.1: 2305186-2305249 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from mze-mir-27d

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature mze-miR-27d-5p

Accession	MIMAT0042326
Description	Metriaclima zebra mze-miR-27d-5p mature miRNA
Sequence	1 - CAGAACUUAGUUGACUGCUGACC - 23
Evidence	experimental Illumina [1]

Mature mze-miR-27d-3p

Accession	MIMAT0042327
Description	Metriaclima zebra mze-miR-27d-3p mature miRNA
Sequence	43 - UUCACAGUGGCUAAGUUCGUCA - 64
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381