miRBase entry: mze-mir-125b-2

Stem-loop mze-mir-125b-2


Accession
MI0034091
Description
Metriaclima zebra mze-mir-125b-2 precursor miRNA


Sequence

UCCCUGAGACCCUAACUUGUGAgcucucuugaugaaaaaucacggguuaggcucuugggacgc
..(((((((.((((((((((((....((.....))....)))))))))))).)))))))....

Structure
--UC       C            gcuc  u 
    CCUGAGA CCUAACUUGUGA    uc u
    ||||||| ||||||||||||    || g
    ggguucu ggauugggcacu    ag a
cgca       c            aaaa  u 


Annotation confidence Not enough data
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Genome context
AGTA03000089.1: 2751000-2751062 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from mze-mir-125b-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mze-miR-125b

Accession MIMAT0042323
Description Metriaclima zebra mze-miR-125b mature miRNA
Sequence 1 - UCCCUGAGACCCUAACUUGUGA - 22
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381