miRBase entry: mze-mir-214-2

Stem-loop mze-mir-214-2


Accession
MI0034090
Description
Metriaclima zebra mze-mir-214-2 precursor miRNA


Sequence

ugccuaucuacacuugcugugcagaauauccuccaaccuguACAGCAGGCACAGACAGGCAGA
(((((.(((...((((((((((((.............))))))))))))...))).)))))..

Structure
--     a   aca            aauau 
  ugccu ucu   cuugcugugcag     c
  ||||| |||   ||||||||||||     c
  ACGGA AGA   GGACGACAuguc     u
AG     C   CAC            caacc 


Annotation confidence Not enough data
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Genome context
AGTA03000234.1: 1311382-1311444 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from mze-mir-214-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mze-miR-214

Accession MIMAT0042320
Description Metriaclima zebra mze-miR-214 mature miRNA
Sequence 42 - ACAGCAGGCACAGACAGGCAGA - 63
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381