miRBase entry: mze-mir-221-1

Stem-loop mze-mir-221-1


Accession
MI0034081
Description
Metriaclima zebra mze-mir-221-1 precursor miRNA


Sequence

accuggcauacaauguagauuucugugugguucaauucuacAGCUACAUUGUCUGCUGGGUUUC
((((((((.(((((((((....(((((.((......)))))))))))))))).))))))))...

Structure
---        u         auuu     u  uu 
   accuggca acaauguag    cugug gg  c
   |||||||| |||||||||    ||||| ||   
   UGGGUCGU UGUUACAUC    GAcau cu  a
CUU        C         ----     -  ua 


Annotation confidence Not enough data
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Genome context
AGTA03000213.1: 206082-206145 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mze-mir-221-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mze-miR-221

Accession MIMAT0042316
Description Metriaclima zebra mze-miR-221 mature miRNA
Sequence 42 - AGCUACAUUGUCUGCUGGGUUUC - 64
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381