miRBase entry: mze-mir-30b

Stem-loop mze-mir-30b


Accession
MI0034078
Description
Metriaclima zebra mze-mir-30b precursor miRNA


Sequence

UGUAAACAUCCUACACUCUCAGCUguguugucauggagcugggagagggguguuuacgcu
.(((((((((((...(((((((((.(((....))).))))))))).)))))))))))...

Structure
--U           ACA         g   u 
   GUAAACAUCCU   CUCUCAGCU ugu g
   |||||||||||   ||||||||| |||  
   cauuugugggg   gagggucga gua u
ucg           --a         g   c 


Annotation confidence Not enough data
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Genome context
AGTA03000224.1: 1523201-1523260 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mze-mir-30b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mze-miR-30b

Accession MIMAT0042314
Description Metriaclima zebra mze-miR-30b mature miRNA
Sequence 1 - UGUAAACAUCCUACACUCUCAGCU - 24
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381