miRBase entry: mze-mir-125a-1

Stem-loop mze-mir-125a-1


Accession
MI0034072
Description
Metriaclima zebra mze-mir-125a-1 precursor miRNA


Sequence

UCCCUGAGACCCUUAACCUGUGaugauaugaaaggucacaggugagguccuugggaac
((((.(((..(((((.((((((((..........)))))))))))))..)))))))..

Structure
--    U   AC     A        gaua 
  UCCC GAG  CCUUA CCUGUGau    u
  |||| |||  ||||| ||||||||     
  aggg uuc  ggagu ggacacug    g
ca    -   cu     -        gaaa 


Annotation confidence Not enough data
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Genome context
AGTA03000049.1: 4055428-4055485 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mze-mir-125a-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mze-miR-125a

Accession MIMAT0042310
Description Metriaclima zebra mze-miR-125a mature miRNA
Sequence 1 - UCCCUGAGACCCUUAACCUGUG - 22
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381