miRBase entry: mze-mir-16a

Stem-loop mze-mir-16a


Accession
MI0034071
Description
Metriaclima zebra mze-mir-16a precursor miRNA


Sequence

UAGCAGCACGUAAAUAUUGGCGugugagaauagaccccaaccccaauauuagcagugcugcuu
.((((((((((.((((((((.((.((.(........))))).)))))))).)).)))))))).

Structure
U        -  A        C  g  a aau 
 AGCAGCAC GU AAUAUUGG Gu ug g   a
 |||||||| || |||||||| || || |    
 ucgucgug cg uuauaacc ca ac c   g
u        a  a        c  -  - cca 


Annotation confidence Not enough data
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Genome context
AGTA03000095.1: 1813030-1813092 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mze-mir-16a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mze-miR-16a

Accession MIMAT0042309
Description Metriaclima zebra mze-miR-16a mature miRNA
Sequence 1 - UAGCAGCACGUAAAUAUUGGCG - 22
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381