miRBase entry: mze-mir-222-1

Stem-loop mze-mir-222-1


Accession
MI0034067
Description
Metriaclima zebra mze-mir-222-1 precursor miRNA


Sequence

ugcucaguagucaguguagauccuguggggcuggcagcAGCUACAUCUGGCUACUGGGUCUC
.((((((((((((((((((...((((.......))))...))))).)))))))))))))...

Structure
--u             -     auc    gg 
   gcucaguagucag uguag   cugu  g
   ||||||||||||| |||||   ||||  g
   UGGGUCAUCGGUC ACAUC   gacg  c
CUC             U     GAc    gu 


Annotation confidence Not enough data
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Genome context
AGTA03000041.1: 1144947-1145008 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mze-mir-222-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mze-miR-222

Accession MIMAT0042307
Description Metriaclima zebra mze-miR-222 mature miRNA
Sequence 39 - AGCUACAUCUGGCUACUGGGUCUC - 62
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381