miRBase entry: mze-mir-30c

Stem-loop mze-mir-30c

Accession

MI0034066

Description

Metriaclima zebra mze-mir-30c precursor miRNA

Sequence

UGUAAACAUCCUACACUCUCGGCaucugcccucugguggccgggagugggacuguuugcacu
(((((((((((..(((((((((((((........))).))))))))))))).))))))))..

Structure

--        -   UA          -   ugc 
  UGUAAACA UCC  CACUCUCGGC auc   c
  |||||||| |||  |||||||||| |||    
  acguuugu agg  gugagggccg ugg   c
uc        c   --          g   ucu

Annotation confidence Not enough data

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Genome context

AGTA03000055.1: 1813641-1813702 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mze-mir-30c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature mze-miR-30c

Accession	MIMAT0042306
Description	Metriaclima zebra mze-miR-30c mature miRNA
Sequence	1 - UGUAAACAUCCUACACUCUCGGC - 23
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381