miRBase entry: mze-let-7d-1

Stem-loop mze-let-7d-1


Accession
MI0034061
Description
Metriaclima zebra mze-let-7d-1 precursor miRNA


Sequence

UGAGGUAGUUGGUUGUAUGGUUucgcauaauaaacagcauggagauaacuguacaaccuucuagcuuucc
.(((.(((..((((((((((((((.(((..........)))..)).))))))))))))..))).)))...

Structure
--U   G   UU            -  -g   aaua 
   GAG UAG  GGUUGUAUGGUU uc  cau    a
   ||| |||  |||||||||||| ||  |||     
   uuc auc  ccaacaugucaa ag  gua    a
ccu   g   uu            u  ag   cgac 


Annotation confidence Not enough data
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Genome context
AGTA03000111.1: 70326-70395 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mze-let-7d-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mze-let-7d

Accession MIMAT0042301
Description Metriaclima zebra mze-let-7d mature miRNA
Sequence 1 - UGAGGUAGUUGGUUGUAUGGUU - 22
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381