miRBase entry: mze-mir-25

Stem-loop mze-mir-25


Accession
MI0034059
Description
Metriaclima zebra mze-mir-25 precursor miRNA


Sequence

aggcggagacuugggcaauugccgggcaucccagagggCAUUGCACUUGUCUCGGUCUGA
((((.(((((..(.(((((.((((((...)))....)))))))).)..))))).))))..

Structure
--    g     uu g     u   ----   c 
  aggc gagac  g gcaau gcc    ggg  
  |||| |||||  | ||||| |||    ||| a
  UCUG CUCUG  C CGUUA Cgg    ccc  
AG    G     UU A     -   gaga   u 


Annotation confidence Not enough data
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Genome context
AGTA03000037.1: 128882-128941 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from mze-mir-25
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mze-miR-25

Accession MIMAT0042300
Description Metriaclima zebra mze-miR-25 mature miRNA
Sequence 39 - CAUUGCACUUGUCUCGGUCUGA - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381