miRBase entry: mze-mir-133a-1

Stem-loop mze-mir-133a-1


Accession
MI0034057
Description
Metriaclima zebra mze-mir-133a-1 precursor miRNA


Sequence

agcugguaaaauggaaccaaaucaccucuugaauggauUUGGUCCCCUUCAACCAGCUGU
(((((((..((.((.((((((((............)))))))).)).))..)))))))..

Structure
--       aa  u  a        accuc 
  agcuggu  aa gg accaaauc     u
  |||||||  || || ||||||||      
  UCGACCA  UU CC UGGUUuag     u
UG       AC  C  C        guaag 


Annotation confidence Not enough data
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Genome context
AGTA03000035.1: 8758016-8758075 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mze-mir-133a-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mze-miR-133a

Accession MIMAT0042298
Description Metriaclima zebra mze-miR-133a mature miRNA
Sequence 39 - UUGGUCCCCUUCAACCAGCUGU - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381