miRBase entry: mze-mir-30a-1

Stem-loop mze-mir-30a-1

Accession

MI0034051

Description

Metriaclima zebra mze-mir-30a-1 precursor miRNA

Sequence

UGUAAACAUCCUUGACUGGAAGCUgguguuaguuucuggggcuuucagucggauguuugcagc
(((((((((((..(((((((((((...(.......)...))))))))))))))))))))))..

Structure

--           UU           ggu uu 
  UGUAAACAUCC  GACUGGAAGCU   g  a
  |||||||||||  |||||||||||   |  g
  acguuuguagg  cugacuuucgg   c  u
cg           --           ggu uu

Annotation confidence Not enough data

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Genome context

AGTA03000055.1: 1811230-1811292 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mze-mir-30a-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature mze-miR-30a

Accession	MIMAT0042295
Description	Metriaclima zebra mze-miR-30a mature miRNA
Sequence	1 - UGUAAACAUCCUUGACUGGAAGCU - 24
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381