miRBase entry: mze-let-7a-5

Stem-loop mze-let-7a-5


Accession
MI0034048
Description
Metriaclima zebra mze-let-7a-5 precursor miRNA


Sequence

UGAGGUAGUAGGUUGUAUAGUUcagagugacaccacaggagauaacuguacagccuccuagcuuucc
.(((.(((.((((((((((((((...(((....)))....))..)))))))))))).))).)))...

Structure
--U   G   U            --  -aga   a 
   GAG UAG AGGUUGUAUAGU  Uc    gug c
   ||| ||| ||||||||||||  ||    |||  
   uuc auc uccgacauguca  ag    cac a
ccu   g   c            au  agga   c 


Annotation confidence Not enough data
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Genome context
AGTA03000206.1: 2252604-2252670 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from mze-let-7a-5
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mze-let-7a

Accession MIMAT0042291
Description Metriaclima zebra mze-let-7a mature miRNA
Sequence 1 - UGAGGUAGUAGGUUGUAUAGUU - 22
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381