miRBase entry: mze-mir-27b

Stem-loop mze-mir-27b


Accession
MI0034046
Description
Metriaclima zebra mze-mir-27b precursor miRNA


Sequence

agagcuuagcugauuggugaacagugauugauucccucuuugUUCACAGUGGCUAAGUUCUGC
(((((((((((.((((.(((((((.((.........)).))))))))))))))))))))))..

Structure
--           g    g       u  uug 
  agagcuuagcu auug ugaacag ga   a
  ||||||||||| |||| ||||||| ||   u
  UCUUGAAUCGG UGAC ACUUguu cu   u
CG           -    -       u  ccc 


Annotation confidence Not enough data
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Genome context
AGTA03000056.1: 3236163-3236225 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from mze-mir-27b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mze-miR-27b

Accession MIMAT0042292
Description Metriaclima zebra mze-miR-27b mature miRNA
Sequence 43 - UUCACAGUGGCUAAGUUCUGC - 63
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381