miRBase entry: mze-mir-100-1

Stem-loop mze-mir-100-1


Accession
MI0034039
Description
Metriaclima zebra mze-mir-100-1 precursor miRNA


Sequence

AACCCGUAGAUCCGAACUUGUGuuaagugacaccacaagcuuguaucuacaggucug
.(((.((((((.(((.((((((...........)))))).))).)))))).)))...

Structure
--A   C      C   A      uuaa 
   ACC GUAGAU CGA CUUGUG    g
   ||| |||||| ||| ||||||    u
   ugg caucua guu gaacac    g
guc   a      u   c      caca 


Annotation confidence Not enough data
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Genome context
AGTA03000072.1: 2128468-2128524 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from mze-mir-100-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mze-miR-100

Accession MIMAT0042288
Description Metriaclima zebra mze-miR-100 mature miRNA
Sequence 1 - AACCCGUAGAUCCGAACUUGUG - 22
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381