miRBase entry: mze-mir-199-1

Stem-loop mze-mir-199-1


Accession
MI0034031
Description
Metriaclima zebra mze-mir-199-1 precursor miRNA


Sequence

cccaguguucagacuaccuguucaggaucuuacugguguACAGUAGUCUGCACAUUGGUU
.(((((((.((((((((.(((((((.......))))...))))))))))).)))))))..

Structure
-c       u        c   ---    ga 
  ccagugu cagacuac ugu   ucag  u
  ||||||| |||||||| |||   ||||  c
  GGUUACA GUCUGAUG ACA   gguc  u
UU       C        -   ugu    au 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
AGTA03000118.1: 3411114-3411173 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mze-mir-199-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mze-miR-199

Accession MIMAT0042287
Description Metriaclima zebra mze-miR-199 mature miRNA
Sequence 40 - ACAGUAGUCUGCACAUUGGUU - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381