miRBase entry: mze-mir-199-1

Stem-loop mze-mir-199-1

Accession

MI0034031

Description

Metriaclima zebra mze-mir-199-1 precursor miRNA

Sequence

cccaguguucagacuaccuguucaggaucuuacugguguACAGUAGUCUGCACAUUGGUU
.(((((((.((((((((.(((((((.......))))...))))))))))).)))))))..

Structure

-c       u        c   ---    ga 
  ccagugu cagacuac ugu   ucag  u
  ||||||| |||||||| |||   ||||  c
  GGUUACA GUCUGAUG ACA   gguc  u
UU       C        -   ugu    au

Annotation confidence Not enough data

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Genome context

AGTA03000118.1: 3411114-3411173 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mze-mir-199-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature mze-miR-199

Accession	MIMAT0042287
Description	Metriaclima zebra mze-miR-199 mature miRNA
Sequence	40 - ACAGUAGUCUGCACAUUGGUU - 60
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381