miRBase entry: mze-mir-199-2

Stem-loop mze-mir-199-2


Accession
MI0034030
Description
Metriaclima zebra mze-mir-199-2 precursor miRNA


Sequence

cccaguguucagacuaccuguucauugucauacugguguACAGUAGUCUGCACAUUGGUU
.(((((((.((((((((.(((.((((........)))).))))))))))).)))))))..

Structure
-c       u        c   u    guc 
  ccagugu cagacuac ugu cauu   a
  ||||||| |||||||| ||| ||||    
  GGUUACA GUCUGAUG ACA gugg   u
UU       C        -   u    uca 


Annotation confidence Not enough data
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Genome context
AGTA03000234.1: 1309539-1309598 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from mze-mir-199-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mze-miR-199

Accession MIMAT0042287
Description Metriaclima zebra mze-miR-199 mature miRNA
Sequence 40 - ACAGUAGUCUGCACAUUGGUU - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381