miRBase entry: mze-mir-183-1

Stem-loop mze-mir-183-1


Accession
MI0034015
Description
Metriaclima zebra mze-mir-183-1 precursor miRNA


Sequence

UAUGGCACUGGUAGAAUUCACUGucacagcacacuaucagugaauuaccauagggccauaaa
((((((..(((((..((((((((..............)))))))))))))....))))))..

Structure
--      --AC     GA        ucacag 
  UAUGGC    UGGUA  AUUCACUG      c
  ||||||    |||||  ||||||||       
  auaccg    accau  uaagugac      a
aa      ggau     --        uaucac 


Annotation confidence Not enough data
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Genome context
AGTA03000076.1: 164951-165012 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mze-mir-183-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mze-miR-183

Accession MIMAT0042279
Description Metriaclima zebra mze-miR-183 mature miRNA
Sequence 1 - UAUGGCACUGGUAGAAUUCACUG - 23
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381