miRBase entry: mze-mir-192

Stem-loop mze-mir-192


Accession
MI0034013
Description
Metriaclima zebra mze-mir-192 precursor miRNA


Sequence

AUGACCUAUGAAUUGACAGCCagugauuuccagccucugccugucaguucuguaggccacu
.((.(((((((((((((((.(((.(.........).))).)))))))))).))))).))..

Structure
-A  A     -          C   u auu 
  UG CCUAU GAAUUGACAG Cag g   u
  || ||||| |||||||||| ||| |   c
  ac ggaug cuugacuguc guc c   c
uc  c     u          c   u cga 


Annotation confidence Not enough data
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Genome context
AGTA03000099.1: 706443-706503 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mze-mir-192
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mze-miR-192

Accession MIMAT0042278
Description Metriaclima zebra mze-miR-192 mature miRNA
Sequence 1 - AUGACCUAUGAAUUGACAGCC - 21
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381