Stem-loop abu-mir-10558

Accession

MI0034001

Description

Astatotilapia burtoni abu-mir-10558 precursor miRNA

Sequence

AUCCGCUUGGCAUCUUUCUUGGccuucaaacaacaauucugaugguaaagauccaaacgggacaca
..(((.((((.((((((....(((.(((...........))).))))))))))))).)))......

Structure

----AU   C    C      CUUG   u   aaca 
      CCG UUGG AUCUUU    Gcc uca    a
      ||| |||| ||||||    ||| |||    c
      ggc aacc uagaaa    ugg agu    a
acacag   a    -      ----   u   cuua 

Annotation confidence Not enough data

Genome context

JH425548.1: 283723-283788 [+]

Mature abu-miR-10558

• Accession: MIMAT0042266
• Description: Astatotilapia burtoni abu-miR-10558 mature miRNA
• Sequence: 1 - AUCCGCUUGGCAUCUUUCUUGG - 22
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381