Stem-loop abu-mir-19d

Accession

MI0033827

Description

Astatotilapia burtoni abu-mir-19d precursor miRNA

Sequence

agcuuugcagggugggcagucagccugugugcauaaggaccagcUGUGCAAACCCAUGCAAAACUG
((.((((((((((..(((..((((.((.((.(....).)))))))))))..)))).)))))).)).

Structure

-  c      -    gg   gu    c  u  g a 
 ag uuugca gggu  gca  cagc ug gu c u
 || |||||| ||||  |||  |||| || || |  
 UC AAACGU CCCA  CGU  GUcg ac ca g a
G  A      A    AA   --    -  -  g a 

Annotation confidence Not enough data

Genome context

JH425502.1: 77538-77603 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from abu-mir-19d

Mature abu-miR-19d

• Accession: MIMAT0042119
• Description: Astatotilapia burtoni abu-miR-19d mature miRNA
• Sequence: 45 - UGUGCAAACCCAUGCAAAACUG - 66
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381