Stem-loop abu-mir-135a

Accession

MI0033771

Description

Astatotilapia burtoni abu-mir-135a precursor miRNA

Sequence

UAUGGCUUUUUAUUCCUAUCUGAcuguacuuaugguucaUAUAGGGAUGGAAGCCAUGCa
((((((((((.((((((((.(((((((....)))).))).))))))))))))))))))..

Structure

--          U        C   -    a 
  UAUGGCUUUU AUUCCUAU UGA cugu c
  |||||||||| |||||||| ||| ||||  
  GUACCGAAGG UAGGGAUA acu ggua u
aC          -        U   u    u 

Annotation confidence Not enough data

Genome context

JH425555.1: 917020-917079 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from abu-mir-135a

Mature abu-miR-135a-5p

• Accession: MIMAT0042077
• Description: Astatotilapia burtoni abu-miR-135a-5p mature miRNA
• Sequence: 1 - UAUGGCUUUUUAUUCCUAUCUGA - 23
• Evidence: experimental ; Illumina [1]

Mature abu-miR-135a-3p

• Accession: MIMAT0042078
• Description: Astatotilapia burtoni abu-miR-135a-3p mature miRNA
• Sequence: 40 - UAUAGGGAUGGAAGCCAUGC - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381