Stem-loop abu-mir-199-1

Accession

MI0033734

Description

Astatotilapia burtoni abu-mir-199-1 precursor miRNA

Sequence

CCCAGUGUUCAGACUACCUGUUcaggaucuuacugguguACAGUAGUCUGCACAUUGGUUa
.(((((((.((((((((.(((((((.......))))...))))))))))).)))))))...

Structure

--C       U        C   ---    ga 
   CCAGUGU CAGACUAC UGU   Ucag  u
   ||||||| |||||||| |||   ||||  c
   GGUUACA GUCUGAUG ACA   gguc  u
aUU       C        -   ugu    au 

Annotation confidence Not enough data

Genome context

JH425376.1: 695749-695809 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from abu-mir-199-1

Mature abu-miR-199-5p

• Accession: MIMAT0042050
• Description: Astatotilapia burtoni abu-miR-199-5p mature miRNA
• Sequence: 1 - CCCAGUGUUCAGACUACCUGUU - 22
• Evidence: experimental ; Illumina [1]

Mature abu-miR-199-3p

• Accession: MIMAT0042051
• Description: Astatotilapia burtoni abu-miR-199-3p mature miRNA
• Sequence: 40 - ACAGUAGUCUGCACAUUGGUU - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381