Stem-loop sly-MIR10541

Accession

MI0033709

Description

Solanum lycopersicum sly-MIR10541 precursor miRNA

Sequence

caauaAGUCACUUUGAUGAUUGUCAAACAcuauaauaagugaaaaacugauuuuuaagucaguuuaaccaacuuaaaagccaauucaaacgaacacauauuaaaauguuugacaauuaucagagugacuuguuuua
.((((((((((((((((((((((((((((...(((((.(((..(((((((((....)))))))))..................(((....)))))).)))))...))))))))))))))))))))))))))))...

Structure

--c                            cua     a   --------------------------aa         u 
   aauaAGUCACUUUGAUGAUUGUCAAACA   uaaua gug                            aaacugauu u
   ||||||||||||||||||||||||||||   ||||| |||                            |||||||||  
   uuguucagugagacuauuaacaguuugu   auuau cac                            uuugacuga u
auu                            aaa     a   aagcaaacuuaaccgaaaauucaaccaa         a 

Annotation confidence Not enough data

Genome context

chr4: 43414327-43414462 [+]

Mature sly-miR10541

• Accession: MIMAT0042035
• Description: Solanum lycopersicum sly-miR10541 mature miRNA
• Sequence: 6 - AGUCACUUUGAUGAUUGUCAAACA - 29
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25218481
   Prediction and characterization of Tomato leaf curl New Delhi virus (ToLCNDV) responsive novel microRNAs in Solanum lycopersicum
   "Pradhan B, Naqvi AR, Saraf S, Mukherjee SK, Dey N"
   "Virus Res (2015) 195:183-195