miRBase entry: sfr-mir-10499b-1

Stem-loop sfr-mir-10499b-1

Accession

MI0033654

Description

Spodoptera frugiperda sfr-mir-10499b-1 precursor miRNA

Sequence

gcauggggcgguaCAAGGGUUUGAAACUCCAUACAuguguaugagaaucugCAUGGAGUUUCAAACUCUUGAAuugcuauaugc
(((((.((((((.(((((((((((((((((((.((.((........)).)).))))))))))))))))))).)))))).)))))

Structure

     g      a                   A  u  gua 
gcaug ggcggu CAAGGGUUUGAAACUCCAU CA gu   u
||||| |||||| ||||||||||||||||||| || ||    
cguau ucguuA GUUCUCAAACUUUGAGGUA gu ua   g
     a      A                   C  c  aga

Annotation confidence Not enough data

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Genome context

JQCY02003683.1: 99787-99870 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from sfr-mir-10499b-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature sfr-miR-10499b-5p

Accession	MIMAT0041971
Description	Spodoptera frugiperda sfr-miR-10499b-5p mature miRNA
Sequence	14 - CAAGGGUUUGAAACUCCAUACA - 35
Evidence	experimental Illumina [1]

Mature sfr-miR-10499b-3p

Accession	MIMAT0041972
Description	Spodoptera frugiperda sfr-miR-10499b-3p mature miRNA
Sequence	52 - CAUGGAGUUUCAAACUCUUGAA - 73
Evidence	experimental Illumina [1]

References

PubMed ID: 25693181
Identification and characteristics of microRNAs from army worm, Spodoptera frugiperda cell line Sf21
Kakumani PK, Chinnappan M, Singh AK, Malhotra P, Mukherjee SK, Bhatnagar RK
PLoS One (2015) 10:e0116988