miRBase entry: sfr-mir-10505-2

Stem-loop sfr-mir-10505-2

Accession

MI0033642

Description

Spodoptera frugiperda sfr-mir-10505-2 precursor miRNA

Sequence

UGUAGAGCCAAGUUUCUAACCcuauacuuuugaaccggcgaguuggccgcacggaaagaguuuagaagauugaauagauuuuuaagcucaagcccauaugacgaauagcaaaaaguccguuuucuuaaaaaguaucuuuccgugcggccaacucgccaguucaaaaguaUAGGGUUAGAAACUUGGCUCuaca
(((((((((((((((((((((((((((((((((((.(((((((((((((((((((((((.(((..((((..((((.(((((((..(((..................))).))))))).))))))))..)))...))))))))))))))))))))))).)))))))))))))))))))))))))))))))))))

Structure

                                   c                       --g   ag    uu    a       aa   caagccca 
UGUAGAGCCAAGUUUCUAACCcuauacuuuugaac ggcgaguuggccgcacggaaaga   uuu  aaga  gaau gauuuuu  gcu        u
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||   |||  ||||  |||| |||||||  |||         
acauCUCGGUUCAAAGAUUGGGAUaugaaaacuug ccgcucaaccggcgugccuuucu   aaa  uucu  uuug cugaaaa  cga        a
                                   a                       aug   aa    --    c       -a   uaagcagu

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

JQCY02034919.1: 2-194 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from sfr-mir-10505-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature sfr-miR-10505-5p

Accession	MIMAT0041950
Description	Spodoptera frugiperda sfr-miR-10505-5p mature miRNA
Sequence	1 - UGUAGAGCCAAGUUUCUAACC - 21
Evidence	experimental Illumina [1]

Mature sfr-miR-10505-3p

Accession	MIMAT0041951
Description	Spodoptera frugiperda sfr-miR-10505-3p mature miRNA
Sequence	170 - UAGGGUUAGAAACUUGGCUC - 189
Evidence	experimental Illumina [1]

References

PubMed ID: 25693181
Identification and characteristics of microRNAs from army worm, Spodoptera frugiperda cell line Sf21
Kakumani PK, Chinnappan M, Singh AK, Malhotra P, Mukherjee SK, Bhatnagar RK
PLoS One (2015) 10:e0116988