miRBase entry: sfr-mir-10505-2

Stem-loop sfr-mir-10505-2


Accession
MI0033642
Description
Spodoptera frugiperda sfr-mir-10505-2 precursor miRNA


Sequence

UGUAGAGCCAAGUUUCUAACCcuauacuuuugaaccggcgaguuggccgcacggaaagaguuuagaagauugaauagauuuuuaagcucaagcccauaugacgaauagcaaaaaguccguuuucuuaaaaaguaucuuuccgugcggccaacucgccaguucaaaaguaUAGGGUUAGAAACUUGGCUCuaca
(((((((((((((((((((((((((((((((((((.(((((((((((((((((((((((.(((..((((..((((.(((((((..(((..................))).))))))).))))))))..)))...))))))))))))))))))))))).)))))))))))))))))))))))))))))))))))

Structure
                                   c                       --g   ag    uu    a       aa   caagccca 
UGUAGAGCCAAGUUUCUAACCcuauacuuuugaac ggcgaguuggccgcacggaaaga   uuu  aaga  gaau gauuuuu  gcu        u
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||   |||  ||||  |||| |||||||  |||         
acauCUCGGUUCAAAGAUUGGGAUaugaaaacuug ccgcucaaccggcgugccuuucu   aaa  uucu  uuug cugaaaa  cga        a
                                   a                       aug   aa    --    c       -a   uaagcagu 


Annotation confidence Not enough data
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Genome context
JQCY02034919.1: 2-194 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from sfr-mir-10505-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sfr-miR-10505-5p

Accession MIMAT0041950
Description Spodoptera frugiperda sfr-miR-10505-5p mature miRNA
Sequence 1 - UGUAGAGCCAAGUUUCUAACC - 21
Evidence experimental
Illumina [1]

Mature sfr-miR-10505-3p

Accession MIMAT0041951
Description Spodoptera frugiperda sfr-miR-10505-3p mature miRNA
Sequence 170 - UAGGGUUAGAAACUUGGCUC - 189
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25693181
    Identification and characteristics of microRNAs from army worm, Spodoptera frugiperda cell line Sf21
    Kakumani PK, Chinnappan M, Singh AK, Malhotra P, Mukherjee SK, Bhatnagar RK
    PLoS One (2015) 10:e0116988