miRBase entry: sfr-mir-10499a-5

Stem-loop sfr-mir-10499a-5

Accession

MI0033633

Description

Spodoptera frugiperda sfr-mir-10499a-5 precursor miRNA

Sequence

ugcaugggacagugCAAGGGUUUAAAACUCCAUACauguauagcaucugCAUGGAGUUUCAAACUCUUGGAuugcucugugca
((((((((.((((.(((((((((.(((((((((.(((((...)))..)).))))))))).))))))))).)))).))))))))

Structure

        a    g         A         A  --   a 
ugcauggg cagu CAAGGGUUU AAACUCCAU Ca  ugu  
|||||||| |||| ||||||||| ||||||||| ||  ||| u
acgugucu guuA GUUCUCAAA UUUGAGGUA gu  acg  
        c    G         C         C  cu   a

Annotation confidence Not enough data

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Genome context

JQCY02003683.1: 99530-99612 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from sfr-mir-10499a-5

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature sfr-miR-10499a-5p

Accession	MIMAT0041931
Description	Spodoptera frugiperda sfr-miR-10499a-5p mature miRNA
Sequence	15 - CAAGGGUUUAAAACUCCAUAC - 35
Evidence	experimental Illumina [1]

Mature sfr-miR-10499a-3p

Accession	MIMAT0041932
Description	Spodoptera frugiperda sfr-miR-10499a-3p mature miRNA
Sequence	50 - CAUGGAGUUUCAAACUCUUGGA - 71
Evidence	experimental Illumina [1]

References

PubMed ID: 25693181
Identification and characteristics of microRNAs from army worm, Spodoptera frugiperda cell line Sf21
Kakumani PK, Chinnappan M, Singh AK, Malhotra P, Mukherjee SK, Bhatnagar RK
PLoS One (2015) 10:e0116988