miRBase entry: sfr-mir-13a

Stem-loop sfr-mir-13a

Accession

MI0033614

Description

Spodoptera frugiperda sfr-mir-13a precursor miRNA

Literature search

1 open access papers mention sfr-mir-13a
(1 sentences)

Sequence

gcugguaguauuagugggucaaugguuucccgggccuagcCUGUCAAAGCGGCGGUGAAAUGuauccgucaucaUAUCACAGCCACUUUGAUGUGGUcgguuuacggagagcaccacguccuuacagcacugccagu
(((((((((.((.(((((....((((((((((((((..(((((((((((.(((.((((.(((..........))).)))).))).)))))))).))).))))..))).))).))))....))))))).)))))))))

Structure

         a  a     ucaa    -   -   --    ua   -        C   G    A   uauc 
gcugguagu uu guggg    uggu uuc ccg  ggcc  gcC UGUCAAAG GGC GUGA AUG    c
||||||||| || |||||    |||| ||| |||  ||||  ||| |||||||| ||| |||| |||     
ugaccguca ga cauuc    acca gag ggc  uugg  UGG GUAGUUUC CCG CACU Uac    g
         c  -     cugc    c   a   au    -c   U        A   A    A   uacu

Annotation confidence Not enough data

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Genome context

JQCY02000649.1: 55432-55568 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from sfr-mir-13a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature sfr-miR-13a-5p

Accession	MIMAT0041906
Description	Spodoptera frugiperda sfr-miR-13a-5p mature miRNA
Sequence	41 - CUGUCAAAGCGGCGGUGAAAUG - 62
Evidence	experimental Illumina [1]

Mature sfr-miR-13a-3p

Accession	MIMAT0041907
Description	Spodoptera frugiperda sfr-miR-13a-3p mature miRNA
Sequence	75 - UAUCACAGCCACUUUGAUGUGGU - 97
Evidence	experimental Illumina [1]

References

PubMed ID: 25693181
Identification and characteristics of microRNAs from army worm, Spodoptera frugiperda cell line Sf21
Kakumani PK, Chinnappan M, Singh AK, Malhotra P, Mukherjee SK, Bhatnagar RK
PLoS One (2015) 10:e0116988