Stem-loop sfr-mir-13b

Accession

MI0033607

Description

Spodoptera frugiperda sfr-mir-13b precursor miRNA

Literature search

1 open access papers mention sfr-mir-13b
(1 sentences)

Sequence

uccguggcccauUCGUAAAAAUGGUUGUGCCAUGUagcugacucaUAUCACAGCCAUUUUUGACGAGUUgggcuggggg
.((.(((((((((((((((((((((((((..(((.((....)))))..))))))))))))).))))).))))))).)).

Structure

u  g       -     -             CC   U  c 
 cc uggccca uUCGU AAAAAUGGUUGUG  AUG ag u
 || ||||||| ||||| |||||||||||||  ||| ||  
 gg gucgggU GAGCA UUUUUACCGACAC  Uac uc g
g  g       U     G             UA   -  a 

Annotation confidence Not enough data

Genome context

JQCY02000649.1: 55342-55420 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from sfr-mir-13b

Mature sfr-miR-13b-5p

• Accession: MIMAT0041892
• Description: Spodoptera frugiperda sfr-miR-13b-5p mature miRNA
• Sequence: 13 - UCGUAAAAAUGGUUGUGCCAUGU - 35
• Evidence: experimental ; Illumina [1]

Mature sfr-miR-13b-3p

• Accession: MIMAT0041893
• Description: Spodoptera frugiperda sfr-miR-13b-3p mature miRNA
• Sequence: 46 - UAUCACAGCCAUUUUUGACGAGUU - 69
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25693181
   Identification and characteristics of microRNAs from army worm, Spodoptera frugiperda cell line Sf21
   Kakumani PK, Chinnappan M, Singh AK, Malhotra P, Mukherjee SK, Bhatnagar RK
   PLoS One (2015) 10:e0116988