miRBase entry: sfr-mir-2b

Stem-loop sfr-mir-2b

Accession

MI0033599

Description

Spodoptera frugiperda sfr-mir-2b precursor miRNA

Literature search

1 open access papers mention sfr-mir-2b
(2 sentences)

Sequence

cggcgCUCACAAAGUGGCUGUAAUGUGuguccccguacaUAUCACAGCCAGCUUUGAUGAGCgcug
(((((((((((((((((((((.(((((((......))))))).))))))).))))).)))))))))

Structure

         -     -       A       uc 
cggcgCUCA CAAAG UGGCUGU AUGUGug  c
||||||||| ||||| ||||||| |||||||   
gucgCGAGU GUUUC ACCGACA UAUacau  c
         A     G       C       gc

Annotation confidence Not enough data

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Genome context

JQCY02000649.1: 55212-55277 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from sfr-mir-2b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature sfr-miR-2b-5p

Accession	MIMAT0041876
Description	Spodoptera frugiperda sfr-miR-2b-5p mature miRNA
Sequence	6 - CUCACAAAGUGGCUGUAAUGUG - 27
Evidence	experimental Illumina [1]

Mature sfr-miR-2b-3p

Accession	MIMAT0041877
Description	Spodoptera frugiperda sfr-miR-2b-3p mature miRNA
Sequence	40 - UAUCACAGCCAGCUUUGAUGAGC - 62
Evidence	experimental Illumina [1]

References

PubMed ID: 25693181
Identification and characteristics of microRNAs from army worm, Spodoptera frugiperda cell line Sf21
Kakumani PK, Chinnappan M, Singh AK, Malhotra P, Mukherjee SK, Bhatnagar RK
PLoS One (2015) 10:e0116988