miRBase entry: sfr-mir-2a

Stem-loop sfr-mir-2a

Accession

MI0033596

Description

Spodoptera frugiperda sfr-mir-2a precursor miRNA

Literature search

1 open access papers mention sfr-mir-2a
(3 sentences)

Sequence

aaugugguuuugGCAUCAAAGUCGGCUUGUCAUaggucauaacguagcuaUCACAGCCAGCUUUGAUGAGCAugaccucauu
((((.((((.((.(((((((((.((((.((.((((.(........).)))).)))))).)))))))))..)).)))).))))

Structure

    u    u  -G         C    U  C    g cau 
aaug gguu ug  CAUCAAAGU GGCU GU AUag u   a
|||| |||| ||  ||||||||| |||| || |||| |    
uuac ccag AC  GUAGUUUCG CCGA CA Uauc a   a
    u    u  GA         A    -  C    g ugc

Annotation confidence Not enough data

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Genome context

JQCY02000649.1: 55599-55680 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from sfr-mir-2a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature sfr-miR-2a-5p

Accession	MIMAT0041870
Description	Spodoptera frugiperda sfr-miR-2a-5p mature miRNA
Sequence	13 - GCAUCAAAGUCGGCUUGUCAU - 33
Evidence	experimental Illumina [1]

Mature sfr-miR-2a-3p

Accession	MIMAT0041871
Description	Spodoptera frugiperda sfr-miR-2a-3p mature miRNA
Sequence	51 - UCACAGCCAGCUUUGAUGAGCA - 72
Evidence	experimental Illumina [1]

References

PubMed ID: 25693181
Identification and characteristics of microRNAs from army worm, Spodoptera frugiperda cell line Sf21
Kakumani PK, Chinnappan M, Singh AK, Malhotra P, Mukherjee SK, Bhatnagar RK
PLoS One (2015) 10:e0116988