miRBase entry: sfr-mir-279a

Stem-loop sfr-mir-279a

Accession

MI0033591

Description

Spodoptera frugiperda sfr-mir-279a precursor miRNA

Literature search

1 open access papers mention sfr-mir-279a
(1 sentences)

Sequence

gcuccuAAUGGGUAUAUGUCUAGUGCcacagugaauuauuucugUGACUAGAUCUACACUCAUUGagagc
((((.((((((((.((.(((((((..(((((.((....)).)))))))))))).)).)))))))).))))

Structure

    c        A  U       GC     u  a 
gcuc uAAUGGGU UA GUCUAGU  cacag ga u
|||| |||||||| || |||||||  ||||| ||  
cgag GUUACUCA AU UAGAUCA  GUguc uu u
    a        C  C       --     u  a

Annotation confidence Not enough data

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Genome context

JQCY02004261.1: 8339-8408 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from sfr-mir-279a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature sfr-miR-279a-5p

Accession	MIMAT0041862
Description	Spodoptera frugiperda sfr-miR-279a-5p mature miRNA
Sequence	7 - AAUGGGUAUAUGUCUAGUGC - 26
Evidence	experimental Illumina [1]

Mature sfr-miR-279a-3p

Accession	MIMAT0041863
Description	Spodoptera frugiperda sfr-miR-279a-3p mature miRNA
Sequence	45 - UGACUAGAUCUACACUCAUUG - 65
Evidence	experimental Illumina [1]

References

PubMed ID: 25693181
Identification and characteristics of microRNAs from army worm, Spodoptera frugiperda cell line Sf21
Kakumani PK, Chinnappan M, Singh AK, Malhotra P, Mukherjee SK, Bhatnagar RK
PLoS One (2015) 10:e0116988