miRBase entry: sfr-mir-10471

Stem-loop sfr-mir-10471

Accession

MI0033571

Description

Spodoptera frugiperda sfr-mir-10471 precursor miRNA

Literature search

1 open access papers mention sfr-mir-10471
(1 sentences)

Sequence

uaaacgagaccgcguCCGGUGCUCUGAUUGGUUACUuuauacaugcaaugauaUAGGCCAAUCUGAACCCUGUAUgagcucucguuua
(((((((((.(.(((.(((.(.((.(((((((..((.(((.(((...)))))).))))))))).)).).))).))).).)))))))))

Structure

         c g   C   U C  U       UA  u   a   g 
uaaacgaga c cgu CGG G UC GAUUGGU  CU uau cau  
||||||||| | ||| ||| | || |||||||  || ||| ||| c
auuugcucu g gUA GUC C AG CUAACCG  GA aua gua  
         c a   U   C A  U       --  U   -   a

Annotation confidence Not enough data

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Genome context

JQCY02003872.1: 7015-7102 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from sfr-mir-10471

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature sfr-miR-10471-5p

Accession	MIMAT0041824
Description	Spodoptera frugiperda sfr-miR-10471-5p mature miRNA
Sequence	16 - CCGGUGCUCUGAUUGGUUACU - 36
Evidence	experimental Illumina [1]

Mature sfr-miR-10471-3p

Accession	MIMAT0041825
Description	Spodoptera frugiperda sfr-miR-10471-3p mature miRNA
Sequence	54 - UAGGCCAAUCUGAACCCUGUAU - 75
Evidence	experimental Illumina [1]

References

PubMed ID: 25693181
Identification and characteristics of microRNAs from army worm, Spodoptera frugiperda cell line Sf21
Kakumani PK, Chinnappan M, Singh AK, Malhotra P, Mukherjee SK, Bhatnagar RK
PLoS One (2015) 10:e0116988