miRBase entry: sfr-mir-279c

Stem-loop sfr-mir-279c

Accession

MI0033569

Description

Spodoptera frugiperda sfr-mir-279c precursor miRNA

Literature search

1 open access papers mention sfr-mir-279c
(1 sentences)

Sequence

gugGGCGAGUUUGCUUCUGGUGCAUGuucauuacuaaucaUGACUAGAUCCAUACUCGUCUGc
((((((((((.((..((((((.((((............))))))))))..)).))))))))))

Structure

          U  CU      G    uucau 
gugGGCGAGU UG  UCUGGU CAUG     u
|||||||||| ||  |||||| ||||      
cGUCUGCUCA AC  AGAUCA GUac     a
          U  CU      -    uaauc

Annotation confidence Not enough data

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Genome context

JQCY02004261.1: 8111-8173 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from sfr-mir-279c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature sfr-miR-279c-5p

Accession	MIMAT0041820
Description	Spodoptera frugiperda sfr-miR-279c-5p mature miRNA
Sequence	4 - GGCGAGUUUGCUUCUGGUGCAUG - 26
Evidence	experimental Illumina [1]

Mature sfr-miR-279c-3p

Accession	MIMAT0041821
Description	Spodoptera frugiperda sfr-miR-279c-3p mature miRNA
Sequence	41 - UGACUAGAUCCAUACUCGUCUG - 62
Evidence	experimental Illumina [1]

References

PubMed ID: 25693181
Identification and characteristics of microRNAs from army worm, Spodoptera frugiperda cell line Sf21
Kakumani PK, Chinnappan M, Singh AK, Malhotra P, Mukherjee SK, Bhatnagar RK
PLoS One (2015) 10:e0116988