miRBase entry: sfr-mir-2c

Stem-loop sfr-mir-2c


Accession
MI0033539
Description
Spodoptera frugiperda sfr-mir-2c precursor miRNA

Literature search
1 open access papers mention sfr-mir-2c
(2 sentences)

Sequence

gcgcgucagggggUCAGCAAAGUGGUUGUGUCUUAugagauucaugaacaUAUCACAGCCAGCUUUGUUGACUucuuugucgcgu
(((((.((((((((((((((((((((((((..((((((...))))))......)))))))).)))))))))).)))))).)))))

Structure
     u      -          -        ----UC      g 
gcgcg cagggg gUCAGCAAAG UGGUUGUG      UUAuga  
||||| |||||| |||||||||| ||||||||      |||||| a
ugcgc guuucu CAGUUGUUUC ACCGACAC      aguacu  
     u      U          G        UAUaca      u 


Annotation confidence Not enough data
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Genome context
JQCY02000649.1: 55067-55151 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from sfr-mir-2c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sfr-miR-2c-5p

Accession MIMAT0041763
Description Spodoptera frugiperda sfr-miR-2c-5p mature miRNA
Sequence 14 - UCAGCAAAGUGGUUGUGUCUUA - 35
Evidence experimental
Illumina [1]

Mature sfr-miR-2c-3p

Accession MIMAT0041764
Description Spodoptera frugiperda sfr-miR-2c-3p mature miRNA
Sequence 51 - UAUCACAGCCAGCUUUGUUGACU - 73
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25693181
    Identification and characteristics of microRNAs from army worm, Spodoptera frugiperda cell line Sf21
    Kakumani PK, Chinnappan M, Singh AK, Malhotra P, Mukherjee SK, Bhatnagar RK
    PLoS One (2015) 10:e0116988