Stem-loop sfr-mir-2c

Accession

MI0033539

Description

Spodoptera frugiperda sfr-mir-2c precursor miRNA

Literature search

1 open access papers mention sfr-mir-2c
(2 sentences)

Sequence

gcgcgucagggggUCAGCAAAGUGGUUGUGUCUUAugagauucaugaacaUAUCACAGCCAGCUUUGUUGACUucuuugucgcgu
(((((.((((((((((((((((((((((((..((((((...))))))......)))))))).)))))))))).)))))).)))))

Structure

     u      -          -        ----UC      g 
gcgcg cagggg gUCAGCAAAG UGGUUGUG      UUAuga  
||||| |||||| |||||||||| ||||||||      |||||| a
ugcgc guuucu CAGUUGUUUC ACCGACAC      aguacu  
     u      U          G        UAUaca      u 

Annotation confidence Not enough data

Genome context

JQCY02000649.1: 55067-55151 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from sfr-mir-2c

Mature sfr-miR-2c-5p

• Accession: MIMAT0041763
• Description: Spodoptera frugiperda sfr-miR-2c-5p mature miRNA
• Sequence: 14 - UCAGCAAAGUGGUUGUGUCUUA - 35
• Evidence: experimental ; Illumina [1]

Mature sfr-miR-2c-3p

• Accession: MIMAT0041764
• Description: Spodoptera frugiperda sfr-miR-2c-3p mature miRNA
• Sequence: 51 - UAUCACAGCCAGCUUUGUUGACU - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25693181
   Identification and characteristics of microRNAs from army worm, Spodoptera frugiperda cell line Sf21
   Kakumani PK, Chinnappan M, Singh AK, Malhotra P, Mukherjee SK, Bhatnagar RK
   PLoS One (2015) 10:e0116988