Stem-loop ssc-mir-454

Accession

MI0033410

Description

Sus scrofa ssc-mir-454 precursor miRNA

Literature search

5 open access papers mention ssc-mir-454
(7 sentences)

Sequence

44280 reads, 26.0 reads per million, 181 experiments

agUAGUGCAAUAUUGCUUAUAGGGUuuugguguuugggaagaacuaugggcaaguugcagauacu
((((.((((((.((((((((((..((((.........))))..))))))))))))))))..))))

Structure

    -G      A          GG    ggu 
agUA  UGCAAU UUGCUUAUAG  Uuuu   g
||||  |||||| ||||||||||  ||||   u
ucau  acguug aacggguauc  gaag   u
    ag      -          aa    ggu 

Annotation confidence Not enough data

Genome context

chr12: 37088130-37088194 [+]

Mature ssc-miR-454-5p

• Accession: MIMAT0041609
• Description: Sus scrofa ssc-miR-454-5p mature miRNA
• Sequence: 3 - UAGUGCAAUAUUGCUUAUAGGGU - 25
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25230983
   The characteristics of the porcine (Sus scrofa) liver miRNAome with the use of next generation sequencing
   "Pawlina K, Gurgul A, Oczkowicz M, Bugno-Poniewierska M"
   "J Appl Genet (2015) 56:239-252