Stem-loop ssc-mir-10390

Accession

MI0033404

Description

Sus scrofa ssc-mir-10390 precursor miRNA

Sequence

75576 reads, 284.0 reads per million, 189 experiments

acuAUACUACUGACAGACCGCAACCUgaacacaaccuuuuuugauccagcaggugguacagggugccgaugucUUUGUGGUUUGUUGAGUAUAGU
((((((((...((((((((((((((((....(((......)))......)))))(((((...)))))........))))))))))).))))))))

Structure

        ACU           ---------------------     --aaca   cc 
acuAUACU   GACAGACCGCA                     ACCUg      caa  u
||||||||   |||||||||||                     |||||      |||   
UGAUAUGA   UUGUUUGGUGU                     uggac      guu  u
        --G           UUcuguagccgugggacaugg     gaccua   uu 

Annotation confidence Medium

Genome context

chr9: 5427130-5427224 [-]

Mature ssc-miR-10390-5p

• Accession: MIMAT0041603
• Description: Sus scrofa ssc-miR-10390-5p mature miRNA
• Sequence: 4 - AUACUACUGACAGACCGCAACCU - 26
• Evidence: experimental ; Illumina [1]

Mature ssc-miR-10390-3p

• Accession: MIMAT0052722
• Description: Sus scrofa ssc-miR-10390-3p mature miRNA
• Sequence: 74 - UUUGUGGUUUGUUGAGUAUAGU - 95
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25230983
   The characteristics of the porcine (Sus scrofa) liver miRNAome with the use of next generation sequencing
   "Pawlina K, Gurgul A, Oczkowicz M, Bugno-Poniewierska M"
   "J Appl Genet (2015) 56:239-252