Stem-loop ssc-mir-10382

Accession

MI0033391

Description

Sus scrofa ssc-mir-10382 precursor miRNA

Sequence

7249 reads, 8.0 reads per million, 178 experiments

agGUGAGUAGGACGGAGGUCAGGgcaagggguagaggcugaaccUCUGACCCUGGCCCCUGACCCUacucgccu
(((((((((((.(((.((((((((..((((((.........))))))..)))))))).)))..)))))))))))

Structure

           -A   A        ca      aga 
agGUGAGUAGG  CGG GGUCAGGg  aggggu   g
|||||||||||  ||| ||||||||  ||||||   g
uccgcucaUCC  GUC CCGGUCCC  UCUcca   c
           CA   C        AG      agu 

Annotation confidence Medium

Genome context

chr14: 121669991-121670064 [+]

Mature ssc-miR-10382-5p

• Accession: MIMAT0052712
• Description: Sus scrofa ssc-miR-10382-5p mature miRNA
• Sequence: 3 - GUGAGUAGGACGGAGGUCAGG - 23
• Evidence: experimental ; Illumina [1]

Mature ssc-miR-10382-3p

• Accession: MIMAT0041589
• Description: Sus scrofa ssc-miR-10382-3p mature miRNA
• Sequence: 45 - UCUGACCCUGGCCCCUGACCCU - 66
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25230983
   The characteristics of the porcine (Sus scrofa) liver miRNAome with the use of next generation sequencing
   "Pawlina K, Gurgul A, Oczkowicz M, Bugno-Poniewierska M"
   "J Appl Genet (2015) 56:239-252