Stem-loop egr-mir-10258

Accession

MI0033149

Description

Echinococcus granulosus egr-mir-10258 precursor miRNA

Sequence

gcuuuUGCCUACUUCCUCAGCAAAAUUGGgagaaaguaaugcgauguugucgucguggccacauucgccAUAUUGUUGUAGAAGGCGGAAAaguug
((((((.((..((((..((((((...(((..(((.((..(((((((....)))))))...)).))).)))..))))))..))))..))))))))..

Structure

--      G  UA    CU      AAU   ga   a  -aa       u 
  gcuuuU CC  CUUC  CAGCAA   UGG  gaa gu   ugcgaug u
  |||||| ||  ||||  ||||||   |||  ||| ||   |||||||  
  ugaAAA GG  GAAG  GUUGUU   Acc  cuu ca   gugcugc g
gu      -  CG    AU      -AU   -g   a  ccg       u 

Annotation confidence Not enough data

Genome context

APAU02000021.1: 673608-673703 [+]

Mature egr-miR-10258-5p

• Accession: MIMAT0041265
• Description: Echinococcus granulosus egr-miR-10258-5p mature miRNA
• Sequence: 6 - UGCCUACUUCCUCAGCAAAAUUGG - 29
• Evidence: experimental ; Illumina [1]

Mature egr-miR-10258-3p

• Accession: MIMAT0041266
• Description: Echinococcus granulosus egr-miR-10258-3p mature miRNA
• Sequence: 70 - AUAUUGUUGUAGAAGGCGGAAA - 91
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25168356
   Genome-wide sequencing of small RNAs reveals a tissue-specific loss of conserved microRNA families in Echinococcus granulosus
   Bai Y, Zhang Z, Jin L, Kang H, Zhu Y, Zhang L, Li X, Ma F, Zhao L, Shi B, Li J, McManus DP, Zhang W, Wang S
   BMC Genomics (2014) 15:736