Stem-loop egr-mir-1992

Accession

MI0033115

Description

Echinococcus granulosus egr-mir-1992 precursor miRNA

Literature search

1 open access papers mention egr-mir-1992
(2 sentences)

Sequence

auccgUUUCAUUGGUCAAUUGCUAAUauuucuugcguaaauuuacaaauaUCAGCAGUUGUACCAUUGAAAUGaauca
...(((((((.((((((((((((.((((((.....(((....))))))))).)))))))).)))).))))))).....

Structure

--auc       U    -        A      cuugc   a 
     cgUUUCA UGGU CAAUUGCU AUauuu     gua a
     ||||||| |||| |||||||| ||||||     |||  
     GUAAAGU ACCA GUUGACGA Uauaaa     cau u
acuaa       U    U        C      -----   u 

Annotation confidence Not enough data

Genome context

APAU02000092.1: 131559-131636 [+]

Mature egr-miR-1992-5p

• Accession: MIMAT0041197
• Description: Echinococcus granulosus egr-miR-1992-5p mature miRNA
• Sequence: 6 - UUUCAUUGGUCAAUUGCUAAU - 26
• Evidence: experimental ; Illumina [1-2]

Mature egr-miR-1992-3p

• Accession: MIMAT0041198
• Description: Echinococcus granulosus egr-miR-1992-3p mature miRNA
• Sequence: 51 - UCAGCAGUUGUACCAUUGAAAUG - 73
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25656283
   microRNA profiling in the zoonotic parasite Echinococcus canadensis using a high-throughput approach
   Macchiaroli N, Cucher M, Zarowiecki M, Maldonado L, Kamenetzky L, Rosenzvit MC
   Parasit Vectors (2015) 8:83


2. PubMed ID: 25168356
   Genome-wide sequencing of small RNAs reveals a tissue-specific loss of conserved microRNA families in Echinococcus granulosus
   Bai Y, Zhang Z, Jin L, Kang H, Zhu Y, Zhang L, Li X, Ma F, Zhao L, Shi B, Li J, McManus DP, Zhang W, Wang S
   BMC Genomics (2014) 15:736