miRBase entry: egr-mir-3479a

Stem-loop egr-mir-3479a


Accession
MI0033108
Description
Echinococcus granulosus egr-mir-3479a precursor miRNA

Literature search
2 open access papers mention egr-mir-3479a
(9 sentences)

Sequence

cacaaCGGUGAAAGUUUAUGCAUUUAcaucgguugaugUAUUGCACGUUCUUUCGCCAUCuugca
......((((((((....((((..((((((....)))))).))))....))))))))........

Structure
--cacaaC        UUUA    UU      g 
        GGUGAAAG    UGCA  UAcauc g
        ||||||||    ||||  ||||||  
        CCGCUUUC    ACGU  AUguag u
acguuCUA        UUGC    -U      u 


Annotation confidence Not enough data
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Genome context
APAU02000006.1: 1737369-1737433 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from egr-mir-3479a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature egr-miR-3479a-5p

Accession MIMAT0041183
Description Echinococcus granulosus egr-miR-3479a-5p mature miRNA
Sequence 6 - CGGUGAAAGUUUAUGCAUUUA - 26
Evidence experimental
Illumina [1-2]

Mature egr-miR-3479a-3p

Accession MIMAT0041184
Description Echinococcus granulosus egr-miR-3479a-3p mature miRNA
Sequence 39 - UAUUGCACGUUCUUUCGCCAUC - 60
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 25656283
    microRNA profiling in the zoonotic parasite Echinococcus canadensis using a high-throughput approach
    Macchiaroli N, Cucher M, Zarowiecki M, Maldonado L, Kamenetzky L, Rosenzvit MC
    Parasit Vectors (2015) 8:83

  2. PubMed ID: 25168356
    Genome-wide sequencing of small RNAs reveals a tissue-specific loss of conserved microRNA families in Echinococcus granulosus
    Bai Y, Zhang Z, Jin L, Kang H, Zhu Y, Zhang L, Li X, Ma F, Zhao L, Shi B, Li J, McManus DP, Zhang W, Wang S
    BMC Genomics (2014) 15:736