Stem-loop cgr-mir-29b-2

Accession

MI0033073

Description

Cricetulus griseus cgr-mir-29b-2 precursor miRNA

Literature search

1 open access papers mention cgr-mir-29b-2
(1 sentences)

Sequence

124143 reads, 535.0 reads per million, 55 experiments

GCUGGUUUCACAUGGUGGCUUAGAuuuuuccaucuuuguaucUAGCACCAUUUGAAAUCAGUGU
((((((((((.((((((.((.((((..............)))))))))))).))))))))))..

Structure

--          C      G  U    uuuucc 
  GCUGGUUUCA AUGGUG CU AGAu      a
  |||||||||| |||||| || ||||       
  UGACUAAAGU UACCAC GA Ucua      u
UG          U      -  -    uguuuc 

Annotation confidence High

Genome context

JH002029.1: 102547-102610 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cgr-mir-29b-2

Mature cgr-miR-29b-5p

• Accession: MIMAT0041144
• Description: Cricetulus griseus cgr-miR-29b-5p mature miRNA
• Sequence: 1 - GCUGGUUUCACAUGGUGGCUUAGA - 24
• Evidence: not_experimental

Mature cgr-miR-29b-2-3p

• Accession: MIMAT0052493
• Description: Cricetulus griseus cgr-miR-29b-2-3p mature miRNA
• Sequence: 43 - UAGCACCAUUUGAAAUCAGUGU - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25689160
   Annotation of additional evolutionary conserved microRNAs in CHO cells from updated genomic data
   "Diendorfer AB, Hackl M, Klanert G, Jadhav V, Reithofer M, Stiefel F, Hesse F, Grillari J, Borth N"
   "Biotechnol Bioeng (2015) 112:1488-1493